JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMCN_chr4_100390341_100523022	0/0	t0014	3183	2	0	0	2	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0015	3184	2	2	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0016	3184	2	2	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0017	3181	2	0	1	0	1	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0018	3181	1	0	0	0	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0019	3181	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0020	3182	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0021	3183	1	0	0	1	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0022	3184	1	0	0	0	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0023	3183	1	0	0	1	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0024	3183	1	0	0	1	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0025	3183	1	0	0	1	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0026	3183	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0027	3183	1	0	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0028	3183	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0029	3181	1	0	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0030	3181	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0031	3183	1	0	1	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0032	3182	1	0	0	0	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0033	3182	1	0	0	1	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0034	3180	1	0	0	0	0	1	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0035	3181	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0036	3180	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0037	3181	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMCN_chr4_100390341_100523022	0/0	t0038	3181	1	1	0	0	0	0	copy fasta	EMCN	chr4	100390341	100523022
EMD_chrX_154374295_154386523	1/1	t0001	517	211	59	37	86	9	18	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0002	517	62	8	20	23	2	9	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0003	511	3	3	0	0	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0004	518	1	0	0	0	0	1	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0005	514	1	0	0	1	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0006	516	1	1	0	0	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0007	517	1	0	0	1	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0008	511	1	0	0	1	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0009	517	1	1	0	0	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0010	517	1	0	1	0	0	0	copy fasta	EMD	chrX	154374295	154386523
EMD_chrX_154374295_154386523	0/0	t0011	516	1	0	0	1	0	0	copy fasta	EMD	chrX	154374295	154386523
EME1_chr17_50368229_50386483	1/1	t0001	618	368	77	77	153	16	43	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0002	618	7	5	1	0	0	1	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0003	618	2	2	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0004	618	2	0	0	2	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0005	618	1	0	0	1	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0006	618	1	0	0	1	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0007	618	1	1	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0008	618	1	0	0	1	0	0	copy fasta	EME1	chr17	50368229	50386483
EME1_chr17_50368229_50386483	0/0	t0009	618	1	1	0	0	0	0	copy fasta	EME1	chr17	50368229	50386483
EME2_chr16_1767810_1786702	0/0	t0001	5882	60	7	18	24	6	5	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/1	t0002	5885	34	0	2	27	1	3	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0003	5886	24	0	1	19	0	4	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0004	5883	22	0	2	17	0	3	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0005	5885	19	2	7	8	1	1	copy fasta	EME2	chr16	1767810	1786702