JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EME2_chr16_1767810_1786702	0/0	t0006	5887	13	12	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0007	5884	12	5	0	7	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0008	5881	10	0	0	9	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0009	5885	9	3	2	4	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0010	5884	9	0	1	5	1	2	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0011	5887	8	8	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0012	5882	8	0	1	5	0	2	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0013	5885	8	8	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0014	5886	8	0	7	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0015	5882	8	0	0	7	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0016	5885	6	2	1	0	0	3	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0017	5884	6	0	2	2	0	2	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0018	5885	6	0	0	6	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0019	5882	6	0	4	0	2	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0020	5884	5	0	2	0	0	3	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0021	5881	5	2	3	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0022	5885	5	0	0	5	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0023	5883	4	4	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0024	5885	4	0	0	3	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0025	5885	4	0	1	0	2	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0026	5881	3	3	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0027	5883	3	0	3	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0028	5887	3	2	1	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0029	5886	3	0	0	3	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0030	5882	3	0	0	3	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0031	5885	3	0	1	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0032	5885	3	1	1	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0033	5882	2	0	0	0	0	2	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0034	5884	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0035	5884	2	0	1	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0036	5882	2	0	1	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0037	5883	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0038	5885	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0039	5885	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0040	5884	2	0	2	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0041	5884	2	1	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0042	5884	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0043	5886	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0044	5887	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0045	5885	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0046	5882	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0047	5882	2	0	0	2	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0048	5885	2	2	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0049	5882	2	0	1	0	1	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0050	5885	2	0	2	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0051	5881	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	1/0	t0052	5883	1	0	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0053	5884	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0054	5884	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0055	5884	1	1	0	0	0	0	copy fasta	EME2	chr16	1767810	1786702