JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EME2_chr16_1767810_1786702	0/0	t0106	5885	1	0	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0107	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0108	5882	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0109	5882	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0110	5882	1	0	0	0	0	1	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0111	5884	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0112	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0113	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0114	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0115	5885	1	0	1	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0116	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0117	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0118	5885	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0119	5882	1	0	1	0	0	0	copy fasta	EME2	chr16	1767810	1786702
EME2_chr16_1767810_1786702	0/0	t0120	5882	1	0	0	1	0	0	copy fasta	EME2	chr16	1767810	1786702
EMG1_chr12_6965913_6984936	1/0	t0001	4139	212	35	43	98	8	27	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0002	4139	30	25	4	0	1	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0003	4139	25	18	3	2	0	2	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0004	4138	12	0	0	12	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/1	t0005	4141	8	2	1	1	0	3	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0006	4139	7	0	0	7	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0007	4139	7	0	0	7	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0008	4139	5	0	0	4	0	1	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0009	4138	5	5	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0010	4139	3	0	0	3	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0011	4139	3	3	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0012	4139	2	2	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0013	4139	2	0	0	0	1	1	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0014	4139	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0015	4139	1	0	0	0	0	1	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0016	4139	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0017	4139	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0018	4139	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0019	4139	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0020	4139	1	1	0	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0021	4139	1	0	1	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0022	4139	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0023	4139	1	0	0	0	0	1	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0024	4141	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0025	4139	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0026	4139	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0027	4139	1	0	1	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0028	4139	1	0	1	0	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0029	4139	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMG1_chr12_6965913_6984936	0/0	t0030	4141	1	0	0	1	0	0	copy fasta	EMG1	chr12	6965913	6984936
EMID1_chr22_29200896_29264597	0/1	t0001	797	145	30	29	49	5	31	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0002	797	104	36	14	43	3	8	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	1/0	t0003	797	80	14	7	53	2	3	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0004	797	6	6	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0005	797	4	4	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597