JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMID1_chr22_29200896_29264597	0/0	t0006	797	2	2	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0007	797	2	0	0	2	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0008	797	1	0	0	0	0	1	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0009	797	1	0	0	0	0	1	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0010	797	1	1	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0011	797	1	1	0	0	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMID1_chr22_29200896_29264597	0/0	t0012	797	1	0	0	1	0	0	copy fasta	EMID1	chr22	29200896	29264597
EMILIN1_chr2_27073615_27091403	1/1	t0001	840	302	81	63	112	16	28	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	t0002	840	5	3	2	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	t0003	840	4	4	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	t0004	840	2	1	1	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	t0005	840	2	2	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN1_chr2_27073615_27091403	0/0	t0006	840	1	1	0	0	0	0	copy fasta	EMILIN1	chr2	27073615	27091403
EMILIN2_chr18_2842006_2921003	0/0	t0001	2781	77	3	6	55	4	9	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	1/0	t0002	2783	71	19	30	14	2	5	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0003	2781	68	0	15	45	1	7	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0004	2782	42	13	10	16	0	3	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/1	t0005	2781	32	9	3	7	3	9	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0006	2781	16	0	0	16	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0007	2783	9	8	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0008	2781	6	0	0	5	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0009	2782	6	1	4	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0010	2781	6	6	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0011	2781	5	1	1	0	2	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0012	2782	5	0	0	5	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0013	2781	4	0	0	4	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0014	2781	4	0	0	4	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0015	2783	4	4	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0016	2775	3	3	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0017	2781	3	0	0	0	0	3	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0018	2781	3	3	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0019	2782	3	3	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0020	2782	3	1	2	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0021	2782	3	0	0	3	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0022	2782	2	0	0	2	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0023	2782	2	0	1	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0024	2780	2	0	0	2	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0025	2782	2	0	0	0	2	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0026	2780	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0027	2783	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0028	2782	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0029	2781	2	0	1	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0030	2782	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0031	2783	2	0	0	2	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0032	2783	2	0	1	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0033	2782	2	0	0	0	0	2	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0034	2781	2	0	0	2	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0035	2783	2	0	1	0	1	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0036	2783	2	0	1	0	1	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0037	2782	2	1	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003