JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMILIN2_chr18_2842006_2921003	0/0	t0038	2783	2	1	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0039	2783	2	0	1	0	1	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0040	2781	2	2	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0041	2781	2	0	0	2	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0042	2782	2	0	0	0	0	2	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0043	2781	2	0	1	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0044	2783	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0045	2781	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0046	2782	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0047	2783	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0048	2781	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0049	2782	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0050	2781	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0051	2780	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0052	2782	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0053	2781	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0054	2783	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0055	2784	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0056	2782	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0057	2784	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0058	2781	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0059	2783	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0060	2782	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0061	2781	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0062	2782	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0063	2782	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0064	2782	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0065	2783	1	0	1	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0066	2783	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0067	2782	1	0	0	0	1	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0068	2781	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0069	2781	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0070	2780	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0071	2781	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0072	2783	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0073	2781	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0074	2782	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0075	2782	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0076	2781	1	0	0	0	0	1	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0077	2781	1	0	0	1	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN2_chr18_2842006_2921003	0/0	t0078	2782	1	1	0	0	0	0	copy fasta	EMILIN2	chr18	2842006	2921003
EMILIN3_chr20_41354962_41371818	1/1	t0001	1491	208	48	38	75	12	33	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0002	1491	63	5	0	58	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0003	1491	53	0	11	42	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0004	1491	24	20	4	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0005	1491	23	3	2	16	1	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0006	1491	21	2	11	1	4	3	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0007	1491	15	0	0	14	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0008	1491	8	0	0	7	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0009	1491	5	5	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818