JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMILIN3_chr20_41354962_41371818	0/0	t0010	1491	3	3	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0011	1491	2	2	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0012	1491	1	0	0	0	1	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0013	1423	1	0	0	0	0	1	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0014	1491	1	0	0	1	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0015	1491	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EMILIN3_chr20_41354962_41371818	0/0	t0016	1491	1	1	0	0	0	0	copy fasta	EMILIN3	chr20	41354962	41371818
EML1_chr14_99788413_99947060	0/0	t0001	2013	112	50	17	33	5	7	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	1/1	t0002	2013	81	7	23	40	0	9	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0003	2013	52	4	13	25	4	6	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0004	1994	9	6	0	3	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0005	2013	8	8	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0006	2013	6	0	4	2	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0007	2013	3	3	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0008	1994	3	3	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0009	2013	2	2	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0010	2013	2	1	0	1	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0011	2013	2	0	0	2	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0012	2013	1	0	0	1	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0013	2013	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0014	2013	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0015	2013	1	0	0	0	1	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0016	2013	1	0	0	1	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0017	2013	1	0	1	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0018	1994	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML1_chr14_99788413_99947060	0/0	t0019	2013	1	1	0	0	0	0	copy fasta	EML1	chr14	99788413	99947060
EML2_chr19_45604400_45644397	1/1	t0001	285	343	67	69	154	14	37	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0002	285	29	18	1	4	1	5	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0003	285	5	0	2	2	0	1	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0004	285	1	0	0	0	1	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0005	285	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0006	285	1	1	0	0	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0007	285	1	0	0	1	0	0	copy fasta	EML2	chr19	45604400	45644397
EML2_chr19_45604400_45644397	0/0	t0008	285	1	0	0	0	0	1	copy fasta	EML2	chr19	45604400	45644397
EML3_chr11_62597218_62617775	0/1	t0001	576	223	44	42	110	8	18	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0002	576	38	7	14	10	0	7	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	1/0	t0003	576	28	24	2	0	1	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0004	577	8	4	2	1	0	1	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0005	576	5	5	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0006	576	5	0	3	0	1	1	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0007	576	2	1	0	1	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0008	577	1	0	0	0	0	1	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0009	576	1	0	1	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML3_chr11_62597218_62617775	0/0	t0010	576	1	1	0	0	0	0	copy fasta	EML3	chr11	62597218	62617775
EML4_chr2_42164353_42337548	1/0	t0001	2601	89	7	14	61	3	3	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0002	2601	85	20	28	23	4	10	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/1	t0003	2601	68	18	14	32	2	1	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0004	2601	23	0	1	18	0	4	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0005	2601	23	9	6	0	3	5	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0006	2601	21	7	0	10	0	4	copy fasta	EML4	chr2	42164353	42337548