JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EML4_chr2_42164353_42337548	0/0	t0007	2601	12	9	1	2	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0008	2601	9	6	1	1	0	1	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0009	2601	5	0	0	5	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0010	2601	3	3	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0011	2601	3	0	0	3	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0012	2601	3	0	0	3	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0013	2601	2	0	0	1	0	1	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0014	2601	2	2	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0015	2601	1	0	1	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0016	2601	1	0	0	1	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0017	2601	1	0	0	1	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0018	2601	1	0	0	0	0	1	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0019	2601	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0020	2601	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0021	2601	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0022	2601	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0023	2601	1	0	0	1	0	0	copy fasta	EML4	chr2	42164353	42337548
EML4_chr2_42164353_42337548	0/0	t0024	2601	1	1	0	0	0	0	copy fasta	EML4	chr2	42164353	42337548
EML5_chr14_88607431_88797953	0/0	t0001	3838	71	6	18	37	4	6	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0002	3837	69	9	16	35	3	6	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0003	3838	55	13	11	17	1	13	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0004	3848	24	14	0	5	0	5	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0005	3837	17	0	2	14	0	1	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0006	3837	14	6	4	2	2	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/1	t0007	3839	13	1	5	0	4	2	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0008	3837	7	7	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0009	3839	5	0	4	0	0	1	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0010	3837	4	0	0	4	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0011	3837	4	4	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0012	3847	4	0	0	4	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0013	3848	4	4	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0014	3838	3	3	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0015	3837	3	3	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0016	3837	2	0	0	2	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0017	3836	2	2	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	1/0	t0018	3838	2	0	0	0	0	1	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0019	3837	2	2	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0020	3838	2	0	0	2	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0021	3838	2	0	2	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0022	3834	2	2	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0023	3835	2	2	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0024	3834	2	2	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0025	3837	2	0	0	2	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0026	3837	2	2	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0027	3837	2	1	1	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0028	3838	1	0	0	0	0	1	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0029	3837	1	0	1	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0030	3837	1	0	1	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0031	3839	1	0	0	0	1	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0032	3838	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953