JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EML5_chr14_88607431_88797953	0/0	t0033	3878	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0034	3838	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0035	3835	1	1	0	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0036	3834	1	0	1	0	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0037	3838	1	0	0	1	0	0	copy fasta	EML5	chr14	88607431	88797953
EML5_chr14_88607431_88797953	0/0	t0038	3838	1	0	0	0	1	0	copy fasta	EML5	chr14	88607431	88797953
EML6_chr2_54718662_54977025	0/1	t0001	2560	66	20	10	26	0	9	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0002	2560	23	1	14	4	0	4	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0003	2560	20	2	10	3	1	4	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	1/0	t0004	2560	17	1	0	10	1	4	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0005	2560	15	4	4	2	1	4	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0006	2560	14	14	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0007	2560	12	0	2	6	2	2	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0008	2560	7	1	3	0	2	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0009	2560	7	0	1	1	1	4	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0010	2560	6	6	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0011	2560	5	1	1	2	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0012	2560	4	4	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0013	2560	4	3	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0014	2560	4	4	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0015	2560	3	0	0	2	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0016	2560	3	3	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0017	2560	3	3	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0018	2560	3	0	0	0	2	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0019	2560	3	0	3	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0020	2560	3	0	1	0	0	2	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0021	2560	2	0	0	0	2	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0022	2560	2	2	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0023	2560	2	1	0	0	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0024	2560	2	1	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0025	2560	2	0	0	0	2	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0026	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0027	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0028	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0029	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0030	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0031	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0032	2560	1	0	0	0	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0033	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0034	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0035	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0036	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0037	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0038	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0039	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0040	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0041	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0042	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0043	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0044	2560	1	0	0	0	1	0	copy fasta	EML6	chr2	54718662	54977025