JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EML6_chr2_54718662_54977025	0/0	t0045	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0046	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0047	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0048	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0049	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0050	2560	1	0	0	1	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0051	2560	1	0	0	0	0	1	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0052	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0053	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0054	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0055	2560	1	0	0	0	1	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0056	2560	1	0	1	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EML6_chr2_54718662_54977025	0/0	t0057	2560	1	1	0	0	0	0	copy fasta	EML6	chr2	54718662	54977025
EMP1_chr12_13191726_13224941	0/1	t0001	5440	106	4	28	54	5	14	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	1/0	t0002	5440	66	14	11	24	4	12	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0003	5442	48	12	5	23	0	8	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0004	5440	46	1	9	25	3	8	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0005	5440	37	0	0	37	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0006	5440	20	1	10	8	0	1	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0007	5440	16	1	3	12	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0008	5440	10	8	2	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0009	5442	8	0	7	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0010	5440	6	6	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0011	5440	5	0	1	0	3	1	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0012	5440	4	4	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0013	5440	4	4	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0014	5440	4	4	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0015	5440	4	4	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0016	5440	4	4	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0017	5440	3	0	0	3	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0018	5442	3	0	0	3	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0019	5440	3	3	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0020	5440	3	3	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0021	5442	2	0	1	0	1	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0022	5442	2	2	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0023	5440	2	0	2	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0024	5440	2	0	0	2	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0025	5440	2	2	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0026	5440	2	2	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0027	5440	2	0	0	2	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0028	5442	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0029	5422	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0030	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0031	5442	1	0	1	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0032	5442	1	0	0	0	0	1	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0033	5440	1	0	0	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0034	5442	1	0	1	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0035	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0036	5440	1	0	0	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0037	5440	1	0	0	0	1	0	copy fasta	EMP1	chr12	13191726	13224941