Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGPAT5_chr8_6703642_6766503	0/0	t0037	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0038	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0039	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0040	4143	1	0	1	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0041	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0042	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0043	4143	1	0	1	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0044	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0045	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0046	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0047	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0048	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0049	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0050	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0051	4143	1	0	0	0	1	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0052	4143	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0053	4143	1	1	0	0	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0054	4143	1	0	0	0	0	1	copy fasta	AGPAT5	chr8	6703642	6766503
AGPAT5_chr8_6703642_6766503	0/0	t0055	4144	1	0	0	1	0	0	copy fasta	AGPAT5	chr8	6703642	6766503
AGPS_chr2_177387773_177548834	0/0	t0001	5658	82	15	16	40	2	9	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0002	5656	50	1	7	37	0	5	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	1/0	t0003	5657	14	10	2	0	0	1	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/1	t0004	5652	12	7	0	0	0	4	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0005	5662	10	9	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0006	5656	7	0	0	7	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0007	5656	6	0	0	6	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0008	5652	5	4	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0009	5660	5	1	1	2	0	1	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0010	5656	4	0	1	3	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0011	5660	4	0	0	4	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0012	5666	3	3	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0013	5662	3	2	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0014	5656	3	3	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0015	5649	3	0	2	0	0	1	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0016	5655	3	3	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0017	5656	2	2	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0018	5654	2	1	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0019	5664	2	2	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0020	5658	2	1	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0021	5658	2	0	0	2	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0022	5660	2	0	0	2	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0023	5657	2	0	2	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0024	5658	2	1	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0025	5652	2	2	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0026	5657	1	0	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0027	5657	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0028	5657	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0029	5658	1	0	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0030	5657	1	0	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0031	5660	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834