JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMP1_chr12_13191726_13224941	0/0	t0038	5440	1	0	0	0	0	1	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0039	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0040	5440	1	0	0	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0041	5442	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0042	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0043	5440	1	0	0	0	0	1	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0044	5442	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0045	5440	1	0	0	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0046	5440	1	0	0	0	1	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0047	5440	1	0	0	0	0	1	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0048	5440	1	0	0	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0049	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0050	5440	1	0	1	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0051	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0052	5440	1	0	1	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0053	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0054	5440	1	0	0	1	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0055	5442	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0056	5440	1	1	0	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP1_chr12_13191726_13224941	0/0	t0057	5440	1	0	1	0	0	0	copy fasta	EMP1	chr12	13191726	13224941
EMP2_chr16_10523422_10585598	0/1	t0001	4590	65	6	25	15	6	12	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0002	4579	37	3	2	23	0	9	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0003	4591	20	2	7	11	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	1/0	t0004	4594	16	2	3	8	0	2	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0005	4583	13	0	0	9	0	4	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0006	4589	12	0	3	6	1	2	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0007	4585	12	11	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0008	4591	7	0	0	7	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0009	4590	7	0	0	7	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0010	4584	7	7	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0011	4596	7	6	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0012	4583	7	2	3	1	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0013	4587	6	0	0	6	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0014	4595	5	0	1	4	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0015	4588	5	5	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0016	4594	4	0	1	0	2	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0017	4597	4	4	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0018	4582	4	0	0	4	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0019	4590	4	0	0	3	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0020	4583	4	0	3	0	1	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0021	4579	4	4	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0022	4591	3	0	0	3	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0023	4590	3	0	0	2	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0024	4584	3	0	0	3	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0025	4589	3	0	1	1	1	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0026	4591	3	0	0	3	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0027	4593	3	0	0	3	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0028	4587	3	2	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0029	4598	3	3	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0030	4582	3	0	0	3	0	0	copy fasta	EMP2	chr16	10523422	10585598