JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMP2_chr16_10523422_10585598	0/0	t0031	4578	3	0	1	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0032	4599	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0033	4603	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0034	4599	2	2	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0035	4591	2	0	0	0	0	2	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0036	4590	2	0	0	1	1	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0037	4598	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0038	4591	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0039	4590	2	0	2	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0040	4590	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0041	4594	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0042	4581	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0043	4590	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0044	4589	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0045	4587	2	2	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0046	4585	2	2	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0047	4580	2	0	0	1	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0048	4579	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0049	4579	2	0	0	2	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0050	4584	2	0	0	1	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0051	4595	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0052	4591	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0053	4593	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0054	4591	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0055	4596	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0056	4597	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0057	4594	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0058	4592	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0059	4593	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0060	4592	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0061	4598	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0062	4591	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0063	4595	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0064	4584	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0065	4592	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0066	4602	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0067	4602	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0068	4583	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0069	4591	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0070	4592	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0071	4591	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0072	4591	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0073	4591	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0074	4601	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0075	4591	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0076	4596	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0077	4594	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0078	4589	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0079	4590	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0080	4590	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598