JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMP2_chr16_10523422_10585598	0/0	t0081	4594	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0082	4594	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0083	4594	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0084	4595	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0085	4593	1	0	0	0	1	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0086	4594	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0087	4599	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0088	4602	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0089	4585	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0090	4599	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0091	4584	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0092	4582	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0093	4582	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0094	4592	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0095	4598	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0096	4582	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0097	4590	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0098	4590	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0099	4592	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0100	4591	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0101	4594	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0102	4598	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0103	4600	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0104	4594	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0105	4589	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0106	4590	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0107	4589	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0108	4554	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0109	4587	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0110	4591	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0111	4597	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0112	4582	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0113	4584	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0114	4584	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0115	4586	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0116	4600	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0117	4587	1	0	0	0	1	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0118	4594	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0119	4598	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0120	4584	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0121	4579	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0122	4594	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0123	4584	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0124	4581	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0125	4589	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0126	4591	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0127	4567	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0128	4589	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0129	4586	1	1	0	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0130	4579	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598