JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMP2_chr16_10523422_10585598	0/0	t0131	4583	1	0	0	0	0	1	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0132	4582	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0133	4577	1	0	1	0	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP2_chr16_10523422_10585598	0/0	t0134	4583	1	0	0	1	0	0	copy fasta	EMP2	chr16	10523422	10585598
EMP3_chr19_48320552_48335553	1/0	t0001	158	183	32	29	93	7	21	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	t0002	158	132	23	27	59	7	16	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	t0003	158	40	29	9	0	0	2	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	t0004	158	7	5	2	0	0	0	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/1	t0005	158	7	0	3	0	2	1	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	t0006	158	3	3	0	0	0	0	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	t0007	158	2	0	2	0	0	0	copy fasta	EMP3	chr19	48320552	48335553
EMP3_chr19_48320552_48335553	0/0	t0008	158	2	0	0	2	0	0	copy fasta	EMP3	chr19	48320552	48335553
EMSY_chr11_76440018_76558031	1/0	t0001	3036	132	43	16	56	8	8	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/1	t0002	3037	121	17	20	64	4	15	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0003	3037	51	4	15	20	3	9	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0004	3036	10	0	0	9	1	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0005	3037	5	0	0	5	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0006	3036	5	5	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0007	3037	5	0	5	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0008	3037	3	0	0	3	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0009	3037	3	0	3	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0010	3036	3	0	1	0	0	2	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0011	3036	3	3	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0012	3037	2	0	1	0	0	1	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0013	3037	2	2	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0014	3036	2	2	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0015	3037	1	0	0	0	0	1	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0016	3036	1	1	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0017	3037	1	0	1	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0018	3037	1	1	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0019	3037	1	0	0	1	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0020	3037	1	0	0	1	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0021	3036	1	0	0	1	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0022	3036	1	0	0	0	0	1	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0023	3036	1	0	1	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0024	3036	1	0	0	0	0	1	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0025	3036	1	1	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0026	3036	1	1	0	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMSY_chr11_76440018_76558031	0/0	t0027	3036	1	0	1	0	0	0	copy fasta	EMSY	chr11	76440018	76558031
EMX1_chr2_72912519_72939891	1/1	t0001	1272	178	62	33	58	6	17	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0002	1272	109	26	24	35	6	18	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0003	1272	4	0	2	0	1	1	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0004	1272	4	4	0	0	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0005	1272	3	3	0	0	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0006	1272	2	1	1	0	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0007	1272	1	0	0	1	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0008	1272	1	1	0	0	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0009	1272	1	1	0	0	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0010	1272	1	0	0	1	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX1_chr2_72912519_72939891	0/0	t0011	1272	1	0	0	0	1	0	copy fasta	EMX1	chr2	72912519	72939891