JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMX1_chr2_72912519_72939891	0/0	t0012	1272	1	0	0	1	0	0	copy fasta	EMX1	chr2	72912519	72939891
EMX2_chr10_117537746_117554546	0/0	t0001	1832	83	4	17	56	3	3	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0002	1833	71	16	15	23	4	13	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/1	t0003	1825	39	0	7	23	2	6	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0004	1832	31	0	0	27	0	4	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0005	1833	15	1	2	11	0	1	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0006	1832	13	8	4	0	1	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0007	1834	13	7	3	2	0	1	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0008	1826	11	11	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0009	1838	11	9	0	2	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0010	1826	10	0	0	5	0	5	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0011	1836	8	5	2	0	1	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0012	1831	6	6	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0013	1831	6	0	0	6	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0014	1833	5	5	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0015	1833	5	1	0	4	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0016	1831	4	0	0	4	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0017	1834	4	0	2	2	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0018	1826	4	1	0	0	2	1	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0019	1832	4	1	2	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0020	1831	4	1	1	1	0	1	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0021	1838	4	0	0	2	0	2	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0022	1832	3	0	0	0	0	3	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0023	1834	3	1	2	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	1/0	t0024	1837	2	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0025	1831	2	0	0	2	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0026	1824	2	0	0	0	1	1	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0027	1834	2	0	0	2	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0028	1839	2	2	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0029	1836	2	2	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0030	1827	2	0	1	0	0	1	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0031	1833	2	1	1	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0032	1839	2	0	0	0	0	2	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0033	1832	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0034	1824	1	0	0	0	1	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0035	1830	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0036	1834	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0037	1827	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0038	1831	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0039	1827	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0040	1832	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0041	1831	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0042	1832	1	0	1	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0043	1834	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0044	1831	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0045	1837	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0046	1834	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0047	1834	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0048	1833	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0049	1832	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546