JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EMX2_chr10_117537746_117554546	0/0	t0050	1832	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0051	1836	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0052	1834	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0053	1833	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0054	1836	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0055	1835	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0056	1839	1	0	0	1	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0057	1836	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0058	1827	1	0	0	0	1	0	copy fasta	EMX2	chr10	117537746	117554546
EMX2_chr10_117537746_117554546	0/0	t0059	1837	1	1	0	0	0	0	copy fasta	EMX2	chr10	117537746	117554546
EN1_chr2_118837171_118852648	0/1	t0001	1250	244	32	67	106	11	27	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	1/0	t0002	1249	168	51	11	89	2	14	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0003	1240	7	0	0	7	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0004	1250	4	4	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0005	1250	4	0	0	0	3	1	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0006	1250	4	0	2	0	2	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0007	1250	3	3	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0008	1249	1	1	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0009	1249	1	1	0	0	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0010	1249	1	0	0	0	0	1	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0011	1250	1	0	0	1	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0012	1250	1	0	0	1	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0013	1249	1	0	0	0	0	1	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0014	1249	1	0	0	1	0	0	copy fasta	EN1	chr2	118837171	118852648
EN1_chr2_118837171_118852648	0/0	t0015	1250	1	0	0	1	0	0	copy fasta	EN1	chr2	118837171	118852648
EN2_chr7_155453129_155469831	0/0	t0001	2397	138	7	25	87	2	17	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0002	2396	63	1	9	45	2	6	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0003	2394	50	25	13	4	2	6	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0004	2393	26	8	5	8	1	4	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0005	2397	16	1	15	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0006	2389	13	6	2	0	1	4	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0007	2394	12	0	3	3	0	6	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0008	2399	10	0	1	9	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0009	2397	8	0	0	8	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0010	2397	7	1	4	0	1	1	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0011	2393	6	3	3	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0012	2393	4	4	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0013	2389	4	4	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0014	2389	4	4	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0015	2397	4	0	0	4	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0016	2400	4	4	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0017	2393	3	2	1	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0018	2392	3	0	0	3	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0019	2396	3	3	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0020	2393	3	3	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0021	2399	2	0	2	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0022	2399	2	2	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0023	2393	2	0	0	2	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0024	2393	2	0	0	2	0	0	copy fasta	EN2	chr7	155453129	155469831
EN2_chr7_155453129_155469831	0/0	t0025	2392	2	2	0	0	0	0	copy fasta	EN2	chr7	155453129	155469831