Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGPS_chr2_177387773_177548834	0/0	t0032	5664	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0033	5662	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0034	5656	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0035	5660	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0036	5658	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0037	5662	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0038	5658	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0039	5658	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0040	5656	1	0	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0041	5668	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0042	5658	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0043	5658	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0044	5656	1	0	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0045	5608	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0046	5656	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0047	5658	1	0	0	1	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0048	5652	1	0	0	0	0	1	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0049	5655	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0050	5655	1	1	0	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGPS_chr2_177387773_177548834	0/0	t0051	5649	1	0	1	0	0	0	copy fasta	AGPS	chr2	177387773	177548834
AGR2_chr7_16786811_16809999	1/1	t0001	1170	268	36	64	118	16	32	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0002	1170	79	11	6	56	1	5	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0003	1169	32	18	4	5	1	4	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0004	1171	19	5	0	13	0	1	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0005	1171	16	15	1	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0006	1170	14	0	0	13	0	1	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0007	1170	9	1	0	8	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0008	1170	6	5	1	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0009	1171	3	2	1	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0010	1171	2	0	0	2	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0011	1169	2	2	0	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0012	1169	2	0	2	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0013	1170	1	0	0	1	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0014	1169	1	0	0	1	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0015	1170	1	0	0	0	0	1	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0016	1170	1	1	0	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0017	1170	1	0	1	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0018	1170	1	1	0	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0019	1170	1	1	0	0	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR2_chr7_16786811_16809999	0/0	t0020	1170	1	0	0	1	0	0	copy fasta	AGR2	chr7	16786811	16809999
AGR3_chr7_16854412_16886983	0/1	t0001	238	304	51	59	149	11	33	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	1/0	t0002	238	140	38	15	62	7	17	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	t0003	238	12	11	1	0	0	0	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	t0004	238	1	0	1	0	0	0	copy fasta	AGR3	chr7	16854412	16886983
AGR3_chr7_16854412_16886983	0/0	t0005	238	1	0	0	1	0	0	copy fasta	AGR3	chr7	16854412	16886983
AGRN_chr1_1015120_1061116	0/1	t0001	1189	122	9	30	69	0	13	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0002	1189	18	11	0	7	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	1/0	t0003	1189	12	8	2	0	0	1	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0004	1189	12	12	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0005	1189	12	9	1	1	0	1	copy fasta	AGRN	chr1	1015120	1061116