JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENC1_chr5_74622409_74645728	0/0	t0023	3052	1	0	0	1	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0024	3052	1	0	0	1	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0025	3052	1	0	0	0	0	1	copy fasta	ENC1	chr5	74622409	74645728
ENC1_chr5_74622409_74645728	0/0	t0026	3053	1	1	0	0	0	0	copy fasta	ENC1	chr5	74622409	74645728
ENDOD1_chr11_95084846_95137645	0/1	t0001	3150	125	12	25	74	5	8	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0002	3149	103	25	22	33	6	17	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0003	3149	36	13	3	12	1	7	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0004	3150	34	12	6	13	2	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0005	3152	20	7	4	8	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0006	3150	9	8	1	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0007	3152	8	5	3	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0008	3151	6	2	2	0	1	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0009	3150	5	0	2	0	0	3	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0010	3150	2	0	0	1	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0011	3149	2	2	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0012	3152	2	2	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0013	3149	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0014	3150	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0015	3150	1	0	0	0	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0016	3150	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0017	3150	1	0	1	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0018	3150	1	0	0	0	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	1/0	t0019	3149	1	0	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0020	3149	1	0	1	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0021	3152	1	0	0	0	1	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0022	3152	1	0	0	0	0	1	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0023	3152	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0024	3149	1	0	0	1	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0025	3149	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0026	3149	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0027	3150	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOD1_chr11_95084846_95137645	0/0	t0028	3149	1	1	0	0	0	0	copy fasta	ENDOD1	chr11	95084846	95137645
ENDOG_chr9_128813500_128827676	1/1	t0001	252	384	81	71	177	13	40	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	t0002	252	31	4	2	20	1	4	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	t0003	252	2	1	1	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	t0004	252	1	1	0	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	t0005	252	1	1	0	0	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOG_chr9_128813500_128827676	0/0	t0006	252	1	0	0	1	0	0	copy fasta	ENDOG	chr9	128813500	128827676
ENDOU_chr12_47704734_47730490	0/1	t0001	1147	224	38	43	113	8	21	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	1/0	t0002	1146	174	42	20	84	7	20	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	t0003	1147	8	1	3	0	1	3	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	t0004	1147	8	8	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	t0005	1147	7	7	0	0	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOU_chr12_47704734_47730490	0/0	t0006	1147	1	0	0	1	0	0	copy fasta	ENDOU	chr12	47704734	47730490
ENDOV_chr17_80410167_80443086	1/0	t0001	1972	116	17	23	64	3	8	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/1	t0002	2015	75	8	16	28	8	14	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0003	2015	47	6	1	34	1	5	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0004	2015	43	3	8	27	1	4	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0005	2016	28	25	3	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0006	2015	28	1	8	13	0	6	copy fasta	ENDOV	chr17	80410167	80443086