JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENDOV_chr17_80410167_80443086	0/0	t0007	2015	19	3	3	10	1	2	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0008	2015	8	6	2	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0009	2015	7	1	3	0	2	1	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0010	2058	5	5	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0011	1972	5	0	2	0	1	2	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0012	2016	4	4	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0013	2023	4	1	3	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0014	2015	4	3	1	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0015	2015	3	3	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0016	1973	2	0	0	2	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0017	2015	2	2	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0018	2015	2	0	2	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0019	2015	2	0	0	2	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0020	2019	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0021	2016	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0022	2015	1	0	0	0	1	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0023	2016	1	1	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0024	1972	1	1	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0025	1972	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0026	2015	1	1	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0027	2015	1	1	0	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0028	2015	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0029	2015	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0030	2015	1	0	1	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0031	2015	1	0	0	1	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0032	2015	1	0	1	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0033	1972	1	0	1	0	0	0	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0034	1972	1	0	0	0	0	1	copy fasta	ENDOV	chr17	80410167	80443086
ENDOV_chr17_80410167_80443086	0/0	t0035	2015	1	0	0	0	0	1	copy fasta	ENDOV	chr17	80410167	80443086
ENGASE_chr17_79069824_79093599	0/0	t0001	2372	94	21	19	42	3	9	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0002	2372	56	2	2	50	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0003	2372	42	1	2	32	0	7	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	1/1	t0004	2372	27	0	10	6	4	5	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0005	2373	15	0	9	3	0	3	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0006	2372	12	12	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0007	2372	8	0	7	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0008	2372	8	1	3	0	2	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0009	2372	7	0	0	6	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0010	2372	7	0	0	7	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0011	2372	7	1	4	0	2	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0012	2373	7	6	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0013	2372	6	1	1	0	2	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0014	2416	5	0	4	0	1	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0015	2372	5	0	0	5	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0016	2372	4	4	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0017	2373	4	1	1	0	0	2	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0018	2372	4	3	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0019	2372	4	1	3	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0020	2373	4	0	0	4	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0021	2372	4	4	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599