JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENGASE_chr17_79069824_79093599	0/0	t0072	2372	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0073	2372	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0074	2372	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0075	2372	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0076	2372	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0077	2372	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0078	2373	1	0	1	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0079	2372	1	0	0	1	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0080	2373	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0081	2372	1	0	0	0	0	1	copy fasta	ENGASE	chr17	79069824	79093599
ENGASE_chr17_79069824_79093599	0/0	t0082	2372	1	1	0	0	0	0	copy fasta	ENGASE	chr17	79069824	79093599
ENG_chr9_127810016_127859658	1/1	t0001	970	310	82	55	126	11	34	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0002	966	17	2	3	3	1	8	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0003	970	4	0	0	4	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0004	970	4	0	0	4	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0005	970	2	2	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0006	970	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0007	970	1	0	0	1	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0008	970	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0009	970	1	0	0	0	0	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0010	970	1	0	0	0	0	1	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0011	970	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENG_chr9_127810016_127859658	0/0	t0012	970	1	1	0	0	0	0	copy fasta	ENG	chr9	127810016	127859658
ENHO_chr9_34516043_34527990	0/0	t0001	798	383	86	77	177	10	33	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	0/0	t0002	798	19	0	10	1	2	6	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	0/0	t0003	798	6	6	0	0	0	0	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	0/1	t0004	798	5	0	1	0	2	1	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	0/0	t0005	798	2	2	0	0	0	0	copy fasta	ENHO	chr9	34516043	34527990
ENHO_chr9_34516043_34527990	1/0	t0006	798	1	0	0	0	0	0	copy fasta	ENHO	chr9	34516043	34527990
ENKD1_chr16_67657945_67671750	1/1	t0001	525	265	84	56	77	8	38	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	t0002	525	3	0	0	3	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	t0003	525	3	3	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	t0004	525	2	2	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKD1_chr16_67657945_67671750	0/0	t0005	525	1	1	0	0	0	0	copy fasta	ENKD1	chr16	67657945	67671750
ENKUR_chr10_24976985_25021158	1/1	t0001	2608	196	36	34	85	12	27	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0002	2608	117	1	25	81	1	9	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0003	2608	20	19	1	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0004	2608	7	5	2	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0005	2608	5	4	1	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0006	2608	5	5	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0007	2608	4	4	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0008	2608	4	4	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0009	2608	4	1	1	0	1	1	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0010	2608	4	4	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0011	2608	3	0	0	3	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0012	2607	3	0	0	3	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0013	2608	3	0	0	0	0	3	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0014	2608	2	0	2	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0015	2608	1	0	1	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0016	2608	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158