JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENKUR_chr10_24976985_25021158	0/0	t0017	2608	1	0	0	1	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0018	2608	1	0	0	1	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0019	2608	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0020	2608	1	1	0	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENKUR_chr10_24976985_25021158	0/0	t0021	2608	1	0	1	0	0	0	copy fasta	ENKUR	chr10	24976985	25021158
ENO1_chr1_8856000_8883686	1/1	t0001	477	406	91	70	183	12	48	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	t0002	477	3	0	0	3	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	t0003	477	2	0	0	2	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	t0004	477	1	1	0	0	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	t0005	477	1	0	0	1	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO1_chr1_8856000_8883686	0/0	t0006	477	1	0	0	1	0	0	copy fasta	ENO1	chr1	8856000	8883686
ENO2_chr12_6909580_6928697	1/0	t0001	990	161	10	32	89	5	24	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/1	t0002	990	99	31	11	37	5	14	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0003	990	37	0	0	36	0	1	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0004	990	27	18	3	6	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0005	990	15	1	6	0	4	4	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0006	982	11	11	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0007	990	8	0	5	0	0	3	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0008	982	4	4	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0009	990	3	0	0	3	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0010	989	3	3	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0011	990	3	3	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0012	990	2	0	0	0	0	2	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0013	990	1	1	0	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0014	990	1	0	0	1	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO2_chr12_6909580_6928697	0/0	t0015	990	1	0	1	0	0	0	copy fasta	ENO2	chr12	6909580	6928697
ENO3_chr17_4946119_4962129	1/1	t0001	149	440	90	80	208	16	44	copy fasta	ENO3	chr17	4946119	4962129
ENO4_chr10_116844499_116887601	0/0	t0001	1001	140	24	26	65	6	19	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/1	t0002	1002	69	13	9	41	0	5	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0003	1003	57	5	17	28	2	5	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0004	1003	39	11	6	19	0	3	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0005	1000	29	11	0	17	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0006	1001	16	1	10	0	3	2	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0007	1003	10	0	2	8	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0008	1002	7	0	0	4	2	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0009	996	6	6	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0010	1002	5	5	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0011	1002	3	3	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0012	1002	3	0	0	3	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0013	1003	2	2	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0014	1002	2	2	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0015	1001	2	0	0	0	1	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0016	1001	1	0	0	0	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0017	1001	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	1/0	t0018	1001	1	0	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0019	1001	1	1	0	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0020	1003	1	0	0	0	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0021	1002	1	0	0	0	0	1	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0022	1001	1	0	1	0	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0023	995	1	0	1	0	0	0	copy fasta	ENO4	chr10	116844499	116887601