JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENO4_chr10_116844499_116887601	0/0	t0024	1002	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENO4_chr10_116844499_116887601	0/0	t0025	1003	1	0	0	1	0	0	copy fasta	ENO4	chr10	116844499	116887601
ENOPH1_chr4_82425590_82466177	1/1	t0001	1298	258	57	53	107	10	29	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0002	1298	28	4	3	13	1	7	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0003	1298	22	1	2	19	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0004	1298	21	14	0	7	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0005	1298	13	0	6	6	1	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0006	1298	11	11	0	0	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0007	1298	9	9	0	0	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0008	1298	2	0	0	0	0	2	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0009	1298	1	0	0	1	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOPH1_chr4_82425590_82466177	0/0	t0010	1298	1	0	0	1	0	0	copy fasta	ENOPH1	chr4	82425590	82466177
ENOSF1_chr18_665318_717630	1/0	t0001	4031	122	11	41	40	10	19	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0002	4019	121	20	12	69	2	18	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0003	4019	36	0	1	34	0	1	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0004	4019	34	12	3	14	2	3	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/1	t0005	4032	16	2	7	0	2	4	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0006	4019	10	10	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0007	4032	8	1	0	7	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0008	4031	8	0	0	8	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0009	4033	6	6	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0010	4031	6	0	5	0	1	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0011	4031	6	6	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0012	4019	6	5	1	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0013	4031	5	5	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0014	4033	2	0	1	0	0	1	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0015	4022	2	0	0	2	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0016	4019	2	0	0	2	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0017	4019	2	0	0	2	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0018	4019	2	0	0	2	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0019	4019	2	0	1	0	1	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0020	4019	2	2	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0021	4019	2	1	1	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0022	4031	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0023	4032	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0024	4032	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0025	4032	1	0	1	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0026	4031	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0027	4032	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0028	4031	1	0	0	0	0	1	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0029	4031	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0030	4078	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0031	4031	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0032	4022	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0033	4022	1	0	0	1	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0034	4028	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0035	4019	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0036	4045	1	0	1	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0037	4020	1	0	0	0	0	1	copy fasta	ENOSF1	chr18	665318	717630
ENOSF1_chr18_665318_717630	0/0	t0038	4019	1	1	0	0	0	0	copy fasta	ENOSF1	chr18	665318	717630