JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENOSF1_chr18_665318_717630	0/0	t0039	4019	1	0	1	0	0	0	copy fasta	ENOSF1	chr18	665318	717630
ENOX1_chr13_43208130_43791972	0/0	t0001	1466	36	13	7	12	0	4	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0002	1463	19	1	2	16	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0003	1465	17	9	2	5	0	1	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0004	1464	17	14	2	0	1	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0005	1474	15	7	4	3	1	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0006	1475	14	5	0	9	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0007	1472	10	1	3	6	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/1	t0008	1464	8	2	2	0	1	2	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0009	1463	6	3	2	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0010	1464	6	0	1	4	1	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0011	1472	3	3	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0012	1466	2	0	0	2	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0013	1463	2	2	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0014	1465	2	1	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0015	1464	2	2	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0016	1466	2	2	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0017	1466	2	0	0	0	0	2	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0018	1464	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	1/0	t0019	1466	1	0	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0020	1465	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0021	1466	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0022	1465	1	0	0	0	0	1	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0023	1462	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0024	1464	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0025	1465	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0026	1464	1	0	0	0	0	1	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0027	1466	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0028	1463	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0029	1466	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0030	1475	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0031	1474	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0032	1473	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0033	1473	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0034	1474	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0035	1473	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0036	1475	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0037	1472	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0038	1474	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0039	1473	1	1	0	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0040	1464	1	0	1	0	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0041	1473	1	0	0	0	0	1	copy fasta	ENOX1	chr13	43208130	43791972
ENOX1_chr13_43208130_43791972	0/0	t0042	1472	1	0	0	1	0	0	copy fasta	ENOX1	chr13	43208130	43791972
ENOX2_chrX_130617325_130908209	1/1	t0001	3381	135	27	21	63	5	17	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0002	3381	4	4	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0003	3381	3	0	2	0	0	1	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0004	3381	2	2	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0005	3382	1	0	0	1	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0006	3381	1	1	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209
ENOX2_chrX_130617325_130908209	0/0	t0007	3377	1	1	0	0	0	0	copy fasta	ENOX2	chrX	130617325	130908209