Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AGRN_chr1_1015120_1061116	0/0	t0006	1189	11	10	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0007	1189	4	0	1	0	0	3	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0008	1189	4	3	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0009	1189	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0010	1189	2	2	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0011	1189	2	1	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0012	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0013	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0014	1189	1	0	0	1	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0015	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0016	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0017	1189	1	0	1	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0018	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0019	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRN_chr1_1015120_1061116	0/0	t0020	1189	1	1	0	0	0	0	copy fasta	AGRN	chr1	1015120	1061116
AGRP_chr16_67477571_67488547	1/1	t0001	100	255	92	39	82	12	28	copy fasta	AGRP	chr16	67477571	67488547
AGRP_chr16_67477571_67488547	0/0	t0002	100	1	0	1	0	0	0	copy fasta	AGRP	chr16	67477571	67488547
AGTPBP1_chr9_85541539_85746954	0/0	t0001	784	149	43	16	74	1	15	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	1/1	t0002	784	126	36	27	36	6	19	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0003	781	12	7	4	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0004	784	2	0	0	2	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0005	784	2	1	1	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0006	796	2	0	2	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0007	784	2	0	0	2	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0008	784	1	0	0	0	0	1	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0009	784	1	1	0	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0010	784	1	0	0	1	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0011	784	1	0	0	0	0	1	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0012	784	1	0	1	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0013	781	1	0	0	0	1	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTPBP1_chr9_85541539_85746954	0/0	t0014	784	1	0	1	0	0	0	copy fasta	AGTPBP1	chr9	85541539	85746954
AGTR1_chr3_148692903_148748003	0/0	t0001	1245	181	16	39	96	9	21	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0002	1245	69	25	5	32	1	6	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/1	t0003	1245	27	1	11	6	4	4	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0004	1245	19	18	1	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0005	1245	13	12	1	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0006	1245	10	10	0	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0007	1245	7	0	3	4	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0008	1245	7	5	2	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0009	1245	3	0	0	3	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0010	1245	3	3	0	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0011	1245	2	0	0	1	0	1	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0012	1245	2	2	0	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0013	1245	1	0	0	1	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	1/0	t0014	1245	1	0	0	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0015	1245	1	0	0	1	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0016	1245	1	0	1	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0017	1245	1	1	0	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0018	1245	1	1	0	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003
AGTR1_chr3_148692903_148748003	0/0	t0019	1245	1	0	1	0	0	0	copy fasta	AGTR1	chr3	148692903	148748003