JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENPP4_chr6_46124989_46151688	0/0	t0015	3283	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0016	3283	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0017	3283	1	0	0	1	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0018	3283	1	1	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0019	3283	1	0	0	0	0	1	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0020	3283	1	1	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0021	3281	1	0	0	0	0	1	copy fasta	ENPP4	chr6	46124989	46151688
ENPP4_chr6_46124989_46151688	0/0	t0022	3211	1	1	0	0	0	0	copy fasta	ENPP4	chr6	46124989	46151688
ENPP5_chr6_46154185_46175980	1/1	t0001	2412	148	24	25	86	2	9	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0002	2415	97	11	19	35	10	22	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0003	2413	57	0	5	42	3	7	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0004	2412	57	16	5	35	1	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0005	2413	26	0	6	15	0	5	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0006	2412	12	12	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0007	2415	9	9	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0008	2409	7	0	6	0	0	1	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0009	2412	5	4	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0010	2412	4	4	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0011	2414	3	1	0	2	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0012	2412	3	3	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0013	2414	2	2	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0014	2412	2	1	1	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0015	2412	2	2	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0016	2415	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0017	2413	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0018	2412	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0019	2413	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0020	2412	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0021	2412	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0022	2412	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0023	2412	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0024	2412	1	1	0	0	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP5_chr6_46154185_46175980	0/0	t0025	2412	1	0	0	1	0	0	copy fasta	ENPP5	chr6	46154185	46175980
ENPP6_chr4_184083706_184222873	0/0	t0001	2525	131	29	34	42	8	18	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/1	t0002	2525	107	5	25	53	4	19	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0003	2526	24	15	8	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0004	2526	11	11	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	1/0	t0005	2526	9	6	0	2	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0006	2525	7	0	0	7	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0007	2526	4	4	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0008	2526	3	3	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0009	2526	2	2	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0010	2525	2	0	2	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0011	2525	2	0	0	2	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0012	2526	2	2	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0013	2526	2	0	0	0	0	2	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0014	2526	2	2	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0015	2525	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0016	2526	1	0	0	0	0	1	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0017	2525	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873