JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENPP6_chr4_184083706_184222873	0/0	t0018	2526	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0019	2525	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0020	2525	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0021	2525	1	0	0	0	0	1	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0022	2525	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0023	2524	1	0	0	1	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0024	2525	1	0	0	0	0	1	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0025	2526	1	1	0	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP6_chr4_184083706_184222873	0/0	t0026	2525	1	0	1	0	0	0	copy fasta	ENPP6	chr4	184083706	184222873
ENPP7_chr17_79725943_79747219	1/0	t0001	640	317	64	56	155	15	26	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/1	t0002	640	109	33	24	27	3	21	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	t0003	640	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	t0004	640	1	0	0	1	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	t0005	640	1	0	0	0	0	1	copy fasta	ENPP7	chr17	79725943	79747219
ENPP7_chr17_79725943_79747219	0/0	t0006	640	1	1	0	0	0	0	copy fasta	ENPP7	chr17	79725943	79747219
ENSA_chr1_150617125_150634612	1/1	t0001	862	374	83	66	164	15	44	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	t0002	862	37	0	2	28	3	4	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	t0003	862	7	7	0	0	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	t0004	862	2	2	0	0	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	t0005	862	1	0	0	1	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENSA_chr1_150617125_150634612	0/0	t0006	862	1	0	0	1	0	0	copy fasta	ENSA	chr1	150617125	150634612
ENTHD1_chr22_39738044_39898760	1/0	t0001	857	185	54	37	71	5	17	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	t0002	857	27	0	11	11	1	4	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	t0003	857	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	t0004	857	1	0	0	0	0	1	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/1	t0005	857	1	0	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	t0006	857	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	t0007	857	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTHD1_chr22_39738044_39898760	0/0	t0008	857	1	1	0	0	0	0	copy fasta	ENTHD1	chr22	39738044	39898760
ENTPD1_chr10_95751163_95882266	1/0	t0001	10961	67	8	10	37	2	9	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0002	10961	37	14	3	17	0	3	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0003	10956	28	0	17	5	4	2	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0004	10961	20	0	8	10	0	2	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/1	t0005	10960	17	1	10	1	2	2	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0006	10960	15	1	2	4	0	8	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0007	10960	13	10	1	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0008	10961	12	1	2	3	3	3	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0009	10962	11	0	4	7	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0010	10962	9	0	0	7	0	2	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0011	10957	9	0	4	0	4	1	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0012	10961	6	0	0	6	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0013	10959	5	5	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0014	10962	5	3	0	1	0	1	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0015	10961	5	4	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0016	10961	4	0	0	4	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0017	10961	4	0	0	4	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0018	10963	3	0	2	0	1	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0019	10961	3	0	1	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0020	10961	3	3	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0021	10961	3	0	0	3	0	0	copy fasta	ENTPD1	chr10	95751163	95882266