JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTPD1_chr10_95751163_95882266	0/0	t0022	10962	3	0	2	0	1	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0023	10962	3	0	0	3	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0024	10963	3	0	0	3	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0025	10961	2	0	0	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0026	10961	2	0	1	0	0	1	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0027	10961	2	0	0	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0028	10961	2	2	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0029	10960	2	0	0	0	0	2	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0030	10961	2	2	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0031	10961	2	2	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0032	10962	2	0	0	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0033	10961	2	0	0	0	0	2	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0034	10961	2	0	0	2	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0035	10962	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0036	10961	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0037	10949	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0038	10959	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0039	10960	1	0	0	0	0	1	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0040	10960	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0041	10961	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0042	10961	1	0	0	0	0	1	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0043	10961	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0044	10961	1	0	0	0	1	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0045	10961	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0046	10961	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0047	10961	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0048	10956	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0049	10956	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0050	10956	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0051	10957	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0052	10961	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0053	10961	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0054	10962	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0055	10962	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0056	10961	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0057	10962	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0058	10962	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0059	10960	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0060	10962	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0061	10962	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0062	10962	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0063	10962	1	1	0	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0064	10962	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0065	10957	1	0	1	0	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD1_chr10_95751163_95882266	0/0	t0066	10961	1	0	0	1	0	0	copy fasta	ENTPD1	chr10	95751163	95882266
ENTPD2_chr9_137043107_137059061	1/1	t0001	615	382	86	74	168	14	38	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	t0002	615	10	0	8	0	0	2	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	t0003	615	6	0	1	1	2	2	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	t0004	615	1	0	0	1	0	0	copy fasta	ENTPD2	chr9	137043107	137059061
ENTPD2_chr9_137043107_137059061	0/0	t0005	615	1	0	1	0	0	0	copy fasta	ENTPD2	chr9	137043107	137059061