JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTPD3_chr3_40382184_40433744	1/0	t0001	1327	179	32	24	92	8	22	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/1	t0002	1327	131	24	22	64	4	16	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0003	1327	38	19	4	10	1	4	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0004	1327	9	9	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0005	1327	5	5	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0006	1327	3	0	1	0	1	1	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0007	1327	2	2	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0008	1327	2	0	2	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0009	1327	1	1	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0010	1327	1	1	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0011	1327	1	1	0	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0012	1327	1	0	0	0	0	1	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD3_chr3_40382184_40433744	0/0	t0013	1327	1	0	1	0	0	0	copy fasta	ENTPD3	chr3	40382184	40433744
ENTPD4_chr8_23424162_23462647	0/0	t0001	3954	121	23	16	68	4	10	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0002	3953	57	0	10	41	2	4	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0003	3956	43	2	18	20	1	2	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	1/1	t0004	3953	42	9	8	9	4	10	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0005	3956	29	0	1	28	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0006	3955	28	2	7	13	0	6	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0007	3955	12	11	1	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0008	3955	9	1	5	0	3	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0009	3956	8	8	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0010	3954	5	5	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0011	3954	4	0	0	4	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0012	3955	4	4	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0013	3954	4	4	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0014	3955	3	3	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0015	3955	3	3	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0016	3953	2	0	2	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0017	3955	2	2	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0018	3954	2	0	2	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0019	3954	2	2	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0020	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0021	3953	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0022	3955	1	0	1	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0023	3937	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0024	3956	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0025	3956	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0026	3955	1	0	1	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0027	3953	1	0	0	0	0	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0028	3953	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0029	3953	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0030	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0031	3955	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0032	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0033	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0034	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0035	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0036	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0037	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647