JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTPD4_chr8_23424162_23462647	0/0	t0038	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0039	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0040	3954	1	0	0	0	0	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0041	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0042	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0043	3954	1	0	0	0	0	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0044	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0045	3954	1	0	0	1	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0046	3954	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0047	3955	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0048	3955	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0049	3955	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0050	3954	1	0	0	0	0	1	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD4_chr8_23424162_23462647	0/0	t0051	3956	1	1	0	0	0	0	copy fasta	ENTPD4	chr8	23424162	23462647
ENTPD5_chr14_73958230_74024288	0/1	t0001	3976	62	1	9	43	2	6	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0002	3976	57	2	9	32	2	12	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0003	3975	44	10	6	15	4	9	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0004	3975	39	19	1	9	0	10	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0005	3976	36	0	18	10	2	6	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	1/0	t0006	3975	32	9	5	11	4	2	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0007	3975	24	0	0	24	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0008	3975	12	9	3	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0009	3972	10	9	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0010	3975	7	6	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0011	3965	6	6	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0012	3974	5	4	0	0	0	1	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0013	3975	4	0	0	4	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0014	3975	4	0	3	0	1	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0015	3975	4	1	3	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0016	3974	4	3	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0017	3975	4	0	3	0	1	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0018	3975	3	3	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0019	3975	3	2	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0020	3976	2	0	0	2	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0021	3975	2	1	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0022	3965	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0023	3975	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0024	3975	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0025	3975	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0026	3974	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0027	3975	1	0	0	1	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0028	3975	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0029	3976	1	0	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0030	3975	1	0	0	0	0	1	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0031	3975	1	0	0	1	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0032	3975	1	0	0	1	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0033	3975	1	1	0	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0034	3976	1	0	0	1	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0035	3975	1	0	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD5_chr14_73958230_74024288	0/0	t0036	3975	1	0	0	0	0	1	copy fasta	ENTPD5	chr14	73958230	74024288