JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTPD5_chr14_73958230_74024288	0/0	t0037	3975	1	0	1	0	0	0	copy fasta	ENTPD5	chr14	73958230	74024288
ENTPD6_chr20_25190712_25233075	0/0	t0001	2650	148	4	15	114	2	13	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	1/0	t0002	2650	115	26	35	22	8	23	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/1	t0003	2650	21	6	7	0	2	5	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0004	2650	14	13	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0005	2650	14	9	2	0	0	3	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0006	2650	10	0	9	0	1	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0007	2650	10	9	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0008	2650	4	2	1	0	1	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0009	2650	4	4	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0010	2650	3	3	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0011	2650	2	2	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0012	2650	2	2	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0013	2650	2	0	1	0	0	1	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0014	2650	2	2	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0015	2650	2	2	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0016	2650	2	0	0	2	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0017	2650	2	1	0	0	0	1	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0018	2650	2	2	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0019	2650	2	2	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0020	2650	1	0	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0021	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0022	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0023	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0024	2650	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0025	2650	1	0	0	0	0	1	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0026	2650	1	0	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0027	2650	1	0	0	0	0	1	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0028	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0029	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0030	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0031	2650	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0032	2650	1	0	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0033	2650	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0034	2650	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0035	2650	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0036	2650	1	0	1	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0037	2650	1	0	0	1	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD6_chr20_25190712_25233075	0/0	t0038	2650	1	1	0	0	0	0	copy fasta	ENTPD6	chr20	25190712	25233075
ENTPD7_chr10_99654509_99716241	0/0	t0001	6734	84	16	11	43	4	10	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0002	6734	71	5	7	52	1	6	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0003	6735	68	16	14	27	0	11	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0004	6734	54	0	8	37	5	4	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0005	6735	44	9	20	6	2	7	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0006	6734	12	9	3	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0007	6735	10	0	3	7	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0008	6734	7	7	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	1/0	t0009	6734	6	3	2	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0010	6734	4	1	3	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0011	6735	4	0	2	0	1	1	copy fasta	ENTPD7	chr10	99654509	99716241