JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTPD7_chr10_99654509_99716241	0/0	t0012	6734	4	4	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0013	6734	3	0	0	3	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0014	6735	3	0	0	2	0	1	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0015	6734	2	2	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0016	6734	2	0	0	0	2	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0017	6734	2	2	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0018	6735	2	2	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0019	6734	2	0	1	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0020	6734	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0021	6734	1	0	0	0	0	1	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0022	6735	1	0	0	0	1	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/1	t0023	6734	1	0	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0024	6735	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0025	6734	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0026	6734	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0027	6734	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0028	6734	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0029	6734	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0030	6734	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0031	6734	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0032	6734	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0033	6735	1	0	0	1	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0034	6734	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0035	6735	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0036	6734	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0037	6735	1	0	0	0	0	1	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0038	6735	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0039	6735	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0040	6734	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0041	6734	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0042	6734	1	1	0	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD7_chr10_99654509_99716241	0/0	t0043	6734	1	0	1	0	0	0	copy fasta	ENTPD7	chr10	99654509	99716241
ENTPD8_chr9_137429364_137446357	1/1	t0001	643	185	55	42	42	11	33	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0002	643	176	18	33	108	5	12	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0003	643	8	5	1	0	0	2	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0004	643	7	6	1	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0005	643	5	4	0	0	0	1	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0006	643	2	2	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0007	643	2	2	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0008	643	2	2	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0009	643	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0010	643	1	1	0	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0011	643	1	0	1	0	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0012	643	1	0	0	1	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTPD8_chr9_137429364_137446357	0/0	t0013	643	1	0	0	1	0	0	copy fasta	ENTPD8	chr9	137429364	137446357
ENTR1_chr9_136396922_136415614	1/0	t0001	1084	243	63	37	105	12	25	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/1	t0002	1084	68	12	20	27	4	4	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0003	1084	34	3	18	7	1	5	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0004	1084	30	5	0	19	1	5	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0005	1084	10	9	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614