JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTR1_chr9_136396922_136415614	0/0	t0006	1084	4	0	3	0	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0007	1071	3	0	0	2	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0008	1084	3	0	0	3	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0009	1073	3	0	0	3	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0010	1084	2	0	1	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0011	1084	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0012	1084	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0013	1084	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0014	1084	1	0	0	0	0	1	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0015	1084	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0016	1084	1	0	1	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0017	1084	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0018	1071	1	0	0	1	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0019	1071	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0020	1084	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0021	1084	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTR1_chr9_136396922_136415614	0/0	t0022	1084	1	1	0	0	0	0	copy fasta	ENTR1	chr9	136396922	136415614
ENTREP1_chr9_69320215_69397456	0/0	t0001	738	186	77	21	55	8	25	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/1	t0002	739	98	8	25	47	6	11	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	1/0	t0003	748	44	0	7	32	0	4	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	t0004	749	10	0	1	8	0	1	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	t0005	749	1	1	0	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	t0006	738	1	0	0	0	0	1	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	t0007	738	1	0	1	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP1_chr9_69320215_69397456	0/0	t0008	739	1	0	1	0	0	0	copy fasta	ENTREP1	chr9	69320215	69397456
ENTREP2_chr15_29115252_29575979	0/0	t0001	3347	24	4	13	5	2	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0002	3347	14	13	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0003	3347	11	5	5	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0004	3347	5	2	0	1	0	2	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0005	3347	5	5	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0006	3347	5	4	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0007	3347	4	4	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0008	3347	3	0	0	2	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0009	3347	3	3	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0010	3347	3	3	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0011	3347	2	0	0	1	0	1	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0012	3347	2	0	0	0	0	2	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0013	3347	2	1	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0014	3347	2	0	0	2	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0015	3347	2	2	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0016	3347	2	0	0	2	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0017	3344	2	2	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0018	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0019	3344	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0020	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0021	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0022	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0023	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0024	3347	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0025	3347	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979