JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENTREP2_chr15_29115252_29575979	0/0	t0026	3347	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0027	3347	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	1/0	t0028	3344	1	0	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0029	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0030	3347	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0031	3347	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0032	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0033	3347	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0034	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0035	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0036	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0037	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0038	3347	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0039	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0040	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0041	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0042	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0043	3347	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0044	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0045	3347	1	0	0	1	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0046	3344	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0047	3347	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0048	3347	1	0	1	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0049	3335	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0050	3335	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP2_chr15_29115252_29575979	0/0	t0051	3335	1	1	0	0	0	0	copy fasta	ENTREP2	chr15	29115252	29575979
ENTREP3_chr1_155242205_155260483	0/0	t0001	1184	213	48	23	119	4	19	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/1	t0002	1184	158	42	30	54	13	18	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0003	1184	5	5	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0004	1184	4	0	1	0	1	2	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0005	1184	3	0	3	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0006	1184	2	0	2	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0007	1184	2	0	1	0	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0008	1184	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0009	1184	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0010	1184	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0011	1184	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0012	1184	1	0	0	0	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0013	1184	1	1	0	0	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0014	1184	1	0	0	1	0	0	copy fasta	ENTREP3	chr1	155242205	155260483
ENTREP3_chr1_155242205_155260483	0/0	t0015	1184	1	0	0	0	0	1	copy fasta	ENTREP3	chr1	155242205	155260483
ENY2_chr8_109329347_109350954	1/1	t0001	2596	331	67	56	156	14	36	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0002	2596	47	2	15	19	3	8	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0003	2596	10	10	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0004	2596	8	0	0	8	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0005	2596	4	3	1	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0006	2597	3	3	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0007	2596	3	3	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0008	2591	3	3	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0009	2596	2	0	1	0	0	1	copy fasta	ENY2	chr8	109329347	109350954