JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ENY2_chr8_109329347_109350954	0/0	t0010	2596	2	0	0	2	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0011	2596	2	0	2	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0012	2596	2	0	0	2	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0013	2596	1	0	0	1	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0014	2596	1	1	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0015	2596	1	0	1	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0016	2596	1	0	0	0	0	1	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0017	2596	1	0	0	1	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0018	2596	1	0	0	0	1	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0019	2596	1	0	0	0	0	1	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0020	2596	1	1	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0021	2596	1	0	0	1	0	0	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0022	2596	1	0	0	0	0	1	copy fasta	ENY2	chr8	109329347	109350954
ENY2_chr8_109329347_109350954	0/0	t0023	2596	1	1	0	0	0	0	copy fasta	ENY2	chr8	109329347	109350954
EOGT_chr3_68970225_69018684	1/0	t0001	2860	123	7	15	81	2	17	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/1	t0002	2870	47	7	20	2	6	11	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0003	2876	46	0	7	33	0	6	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0004	2878	36	0	8	22	0	6	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0005	2868	20	18	2	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0006	2880	13	1	2	9	0	1	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0007	2866	9	3	5	0	1	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0008	2860	8	0	0	8	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0009	2872	8	0	1	2	3	2	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0010	2874	8	0	8	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0011	2872	7	0	0	7	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0012	2872	7	6	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0013	2870	7	3	0	4	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0014	2882	6	4	1	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0015	2876	5	5	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0016	2870	5	5	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0017	2870	5	4	1	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0018	2862	5	0	0	4	0	1	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0019	2858	5	0	1	4	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0020	2868	5	1	0	4	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0021	2862	4	1	0	3	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0022	2862	4	0	0	4	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0023	2868	3	3	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0024	2868	3	0	0	3	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0025	2874	3	0	0	3	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0026	2862	3	2	1	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0027	2870	3	1	2	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0028	2878	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0029	2872	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0030	2870	2	0	0	2	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0031	2866	2	0	0	2	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0032	2866	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0033	2876	2	0	0	2	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0034	2876	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0035	2874	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0036	2874	2	2	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684