JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EOGT_chr3_68970225_69018684	0/0	t0037	2860	1	0	0	0	1	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0038	2872	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0039	2862	1	0	0	0	1	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0040	2878	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0041	2870	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0042	2874	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0043	2870	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0044	2878	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0045	2876	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0046	2870	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0047	2870	1	0	0	0	0	1	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0048	2870	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0049	2868	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0050	2860	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0051	2860	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0052	2888	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0053	2886	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0054	2884	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0055	2879	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0056	2876	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0057	2872	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0058	2862	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0059	2860	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0060	2872	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0061	2872	1	0	0	1	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0062	2870	1	0	0	0	0	1	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0063	2868	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOGT_chr3_68970225_69018684	0/0	t0064	2870	1	1	0	0	0	0	copy fasta	EOGT	chr3	68970225	69018684
EOLA1_chrX_149536012_149553331	1/0	t0001	1931	154	22	28	72	6	25	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0002	1930	48	1	15	30	0	2	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/1	t0003	1930	30	11	5	2	5	6	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0004	1931	14	4	1	8	0	1	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0005	1930	14	13	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0006	1931	11	10	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0007	1931	10	0	0	10	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0008	1932	4	0	0	2	2	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0009	1932	4	4	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0010	1931	3	0	0	3	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0011	1930	3	2	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0012	1930	2	0	0	2	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0013	1931	2	2	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0014	1930	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0015	1931	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0016	1930	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0017	1931	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0018	1932	1	0	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0019	1932	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0020	1930	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0021	1931	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0022	1932	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331