JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EOLA1_chrX_149536012_149553331	0/0	t0023	1930	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0024	1931	1	0	1	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0025	1938	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0026	1930	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0027	1932	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0028	1926	1	1	0	0	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA1_chrX_149536012_149553331	0/0	t0029	1931	1	0	0	1	0	0	copy fasta	EOLA1	chrX	149536012	149553331
EOLA2_chrX_149927197_149943491	1/1	t0001	857	300	64	56	133	13	32	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0002	857	9	9	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0003	857	5	5	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0004	857	3	1	0	2	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0005	857	3	0	0	3	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0006	858	1	0	0	1	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0007	858	1	0	0	1	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0008	857	1	0	0	1	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0009	858	1	1	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0010	857	1	0	0	1	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0011	857	1	0	0	0	0	1	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0012	857	1	1	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0013	857	1	0	0	1	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0014	857	1	1	0	0	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0015	857	1	0	0	0	0	1	copy fasta	EOLA2	chrX	149927197	149943491
EOLA2_chrX_149927197_149943491	0/0	t0016	852	1	0	0	1	0	0	copy fasta	EOLA2	chrX	149927197	149943491
EOMES_chr3_27710953_27727323	0/0	t0001	1148	234	48	38	114	5	29	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	1/1	t0002	1147	95	6	24	48	8	7	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0003	1149	34	25	1	7	0	1	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0004	1148	10	8	0	1	0	1	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0005	1147	9	3	2	2	1	1	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0006	1148	7	4	2	0	0	1	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0007	1148	2	0	1	0	0	1	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0008	1147	2	0	2	0	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0009	1148	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0010	1148	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0011	1148	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0012	1147	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0013	1148	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0014	1147	1	0	0	1	0	0	copy fasta	EOMES	chr3	27710953	27727323
EOMES_chr3_27710953_27727323	0/0	t0015	1147	1	0	0	0	0	1	copy fasta	EOMES	chr3	27710953	27727323
EP300_chr22_41087592_41185077	0/1	t0001	1519	40	1	17	7	2	12	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0002	1523	34	1	6	22	0	5	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	1/0	t0003	1535	26	11	4	5	1	4	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0004	1537	18	9	4	4	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0005	1525	15	3	0	11	1	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0006	1527	11	0	1	6	1	3	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0007	1531	10	9	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0008	1529	10	1	3	1	4	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0009	1527	10	0	3	7	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0010	1533	6	3	1	1	1	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0011	1527	6	3	1	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0012	1521	6	5	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077