JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EP300_chr22_41087592_41185077	0/0	t0013	1521	6	1	3	0	1	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0014	1523	5	5	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0015	1524	4	4	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0016	1533	4	4	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0017	1531	4	4	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0018	1511	4	1	1	0	1	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0019	1517	3	0	0	3	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0020	1529	3	1	0	0	0	2	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0021	1527	3	0	0	3	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0022	1526	3	0	1	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0023	1528	3	0	0	3	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0024	1534	3	3	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0025	1526	2	1	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0026	1539	2	2	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0027	1535	2	1	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0028	1528	2	0	0	1	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0029	1529	2	0	0	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0030	1530	2	0	0	1	1	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0031	1528	2	0	0	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0032	1527	2	2	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0033	1535	2	0	0	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0034	1533	2	0	0	2	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0035	1535	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0036	1530	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0037	1517	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0038	1536	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0039	1534	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0040	1530	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0041	1528	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0042	1522	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0043	1528	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0044	1551	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0045	1527	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0046	1519	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0047	1513	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0048	1535	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0049	1535	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0050	1535	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0051	1528	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0052	1535	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0053	1529	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0054	1527	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0055	1528	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0056	1526	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0057	1529	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0058	1526	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0059	1527	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0060	1526	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0061	1529	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0062	1527	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077