JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EP300_chr22_41087592_41185077	0/0	t0063	1530	1	0	0	0	1	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0064	1518	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0065	1529	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0066	1538	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0067	1534	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0068	1530	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0069	1526	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0070	1524	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0071	1529	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0072	1537	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0073	1519	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0074	1509	1	0	1	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0075	1535	1	1	0	0	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0076	1531	1	0	0	1	0	0	copy fasta	EP300	chr22	41087592	41185077
EP300_chr22_41087592_41185077	0/0	t0077	1533	1	0	0	0	0	1	copy fasta	EP300	chr22	41087592	41185077
EP400_chr12_131944942_132085460	1/1	t0001	2918	123	30	35	36	5	15	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0002	2918	49	23	3	20	1	2	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0003	2918	8	8	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0004	2918	8	6	2	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0005	2918	5	0	0	4	0	1	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0006	2918	4	4	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0007	2918	3	3	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0008	2918	2	2	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0009	2918	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0010	2918	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0011	2918	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0012	2918	1	0	1	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0013	2918	1	1	0	0	0	0	copy fasta	EP400	chr12	131944942	132085460
EP400_chr12_131944942_132085460	0/0	t0014	2918	1	0	0	1	0	0	copy fasta	EP400	chr12	131944942	132085460
EPAS1_chr2_46292407_46391697	0/1	t0001	2541	174	28	27	85	8	25	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	1/0	t0002	2543	26	1	8	7	5	4	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0003	2541	18	0	1	17	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0004	2545	15	7	1	4	0	3	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0005	2542	13	11	2	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0006	2542	11	10	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0007	2542	10	1	2	5	1	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0008	2542	6	5	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0009	2543	5	3	2	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0010	2541	4	0	3	1	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0011	2542	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0012	2543	2	0	2	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0013	2541	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0014	2541	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0015	2542	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0016	2541	2	0	2	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0017	2541	2	1	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0018	2542	2	0	0	1	1	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0019	2546	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0020	2543	2	2	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0021	2543	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697