JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPAS1_chr2_46292407_46391697	0/0	t0022	2543	1	0	0	1	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0023	2541	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0024	2541	1	0	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0025	2541	1	0	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0026	2541	1	0	0	0	0	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0027	2541	1	0	0	0	0	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0028	2541	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0029	2541	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0030	2546	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0031	2542	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0032	2542	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0033	2543	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0034	2543	1	0	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0035	2541	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0036	2543	1	0	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0037	2544	1	0	0	0	0	1	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0038	2541	1	0	0	1	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0039	2542	1	0	1	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0040	2543	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0041	2543	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0042	2542	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0043	2543	1	1	0	0	0	0	copy fasta	EPAS1	chr2	46292407	46391697
EPAS1_chr2_46292407_46391697	0/0	t0044	2541	1	0	0	0	1	0	copy fasta	EPAS1	chr2	46292407	46391697
EPB41L1_chr20_36149740_36237799	1/1	t0001	3631	95	17	22	42	5	7	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0002	3631	37	12	7	11	2	5	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0003	3631	25	4	6	15	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0004	3631	20	16	4	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0005	3631	10	0	1	1	2	6	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0006	3631	10	8	2	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0007	3631	6	6	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0008	3630	6	6	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0009	3631	5	4	1	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0010	3629	5	5	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0011	3631	3	3	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0012	3631	2	2	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0013	3631	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0014	3631	1	0	0	0	1	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0015	3631	1	0	1	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0016	3631	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0017	3631	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0018	3631	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0019	3631	1	0	1	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0020	3631	1	0	1	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0021	3631	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0022	3631	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0023	3631	1	0	0	1	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L1_chr20_36149740_36237799	0/0	t0024	3631	1	1	0	0	0	0	copy fasta	EPB41L1	chr20	36149740	36237799
EPB41L2_chr6_130834347_131068245	0/1	t0001	1363	149	15	18	92	6	17	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0002	1363	92	31	11	30	1	19	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0003	1363	46	5	3	35	1	2	copy fasta	EPB41L2	chr6	130834347	131068245