JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPB41L2_chr6_130834347_131068245	1/0	t0004	1363	35	11	16	0	1	6	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0005	1363	11	10	1	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0006	1359	10	10	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0007	1363	4	3	1	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0008	1363	2	0	2	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0009	1363	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0010	1363	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0011	1363	1	0	1	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0012	1363	1	0	1	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0013	1363	1	0	0	1	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0014	1359	1	1	0	0	0	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L2_chr6_130834347_131068245	0/0	t0015	1363	1	0	0	0	1	0	copy fasta	EPB41L2	chr6	130834347	131068245
EPB41L3_chr18_5387386_5548997	1/1	t0001	1196	115	19	25	54	5	10	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0002	1196	74	56	9	4	0	5	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0003	1196	10	0	6	1	1	2	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0004	1196	5	5	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0005	1196	5	2	1	0	0	2	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0006	1196	3	0	3	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0007	1196	3	3	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0008	1196	2	0	0	0	0	2	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0009	1196	1	0	0	1	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0010	1196	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0011	1196	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0012	1196	1	1	0	0	0	0	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L3_chr18_5387386_5548997	0/0	t0013	1196	1	0	0	0	0	1	copy fasta	EPB41L3	chr18	5387386	5548997
EPB41L4A_chr5_112157619_112424277	0/1	t0001	2610	60	14	10	26	3	6	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0002	2610	26	13	2	8	0	3	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0003	2605	17	3	2	11	1	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	1/0	t0004	2610	17	2	7	0	4	3	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0005	2609	14	1	4	9	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0006	2605	7	7	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0007	2609	7	3	4	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0008	2609	6	0	1	5	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0009	2610	6	0	4	0	0	2	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0010	2610	5	5	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0011	2612	5	5	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0012	2606	4	4	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0013	2610	3	0	2	0	1	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0014	2610	3	0	2	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0015	2606	2	2	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0016	2609	2	1	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0017	2604	2	1	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0018	2605	2	2	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0019	2606	2	2	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0020	2610	2	1	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0021	2610	2	2	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0022	2609	2	0	0	1	1	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0023	2610	2	2	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0024	2610	2	0	2	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0025	2610	2	0	0	0	1	1	copy fasta	EPB41L4A	chr5	112157619	112424277