JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPB41L4A_chr5_112157619_112424277	0/0	t0026	2609	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0027	2609	1	0	0	1	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0028	2605	1	0	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0029	2610	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0030	2610	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0031	2610	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0032	2612	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0033	2609	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0034	2609	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0035	2610	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0036	2609	1	0	0	0	1	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0037	2605	1	0	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0038	2605	1	0	0	1	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0039	2605	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0040	2605	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0041	2605	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0042	2610	1	0	0	1	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0043	2610	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0044	2610	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0045	2610	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0046	2610	1	0	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0047	2610	1	0	0	0	0	1	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0048	2610	1	0	1	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0049	2612	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0050	2610	1	0	0	1	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4A_chr5_112157619_112424277	0/0	t0051	2610	1	1	0	0	0	0	copy fasta	EPB41L4A	chr5	112157619	112424277
EPB41L4B_chr9_109166974_109326059	0/1	t0001	3194	62	4	14	41	0	2	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0002	3200	26	10	3	10	0	3	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0003	3193	21	1	10	8	2	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0004	3195	17	0	2	14	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0005	3201	13	11	0	0	2	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0006	3200	13	1	2	5	0	5	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0007	3193	13	0	3	9	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	1/0	t0008	3194	11	0	2	8	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0009	3202	8	7	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0010	3195	7	2	2	0	1	2	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0011	3195	7	0	2	4	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0012	3201	6	6	0	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0013	3181	6	0	1	3	2	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0014	3194	6	0	3	3	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0015	3194	5	0	3	1	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0016	3196	4	2	1	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0017	3201	4	0	1	1	1	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0018	3194	4	0	0	4	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0019	3194	4	1	3	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0020	3194	4	3	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0021	3188	3	0	0	3	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0022	3195	3	3	0	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0023	3195	3	0	0	3	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0024	3182	3	0	2	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059