JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
EPB41L4B_chr9_109166974_109326059	0/0	t0025	3195	3	3	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0026	3207	2	0	2	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0027	3199	2	0	2	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0028	3194	2	2	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0029	3200	2	0	0	0	2	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0030	3200	2	2	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0031	3206	2	0	0	0	2	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0032	3181	2	0	1	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0033	3182	2	0	0	1	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0034	3196	2	2	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0035	3195	2	2	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0036	3195	2	2	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0037	3194	2	2	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0038	3207	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0039	3200	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0040	3206	1	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0041	3189	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0042	3189	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0043	3195	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0044	3194	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0045	3194	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0046	3194	1	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0047	3200	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0048	3201	1	0	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0049	3200	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0050	3200	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0051	3200	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0052	3201	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0053	3201	1	0	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0054	3200	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0055	3207	1	0	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0056	3206	1	0	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0057	3194	1	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0058	3201	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0059	3194	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0060	3194	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0061	3194	1	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0062	3182	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0063	3193	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0064	3195	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0065	3194	1	0	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0066	3193	1	0	0	0	1	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0067	3193	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0068	3194	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0069	3194	1	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0070	3194	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0071	3194	1	1	0	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0072	3195	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0073	3182	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L4B_chr9_109166974_109326059	0/0	t0074	3182	1	0	0	1	0	copy fasta	EPB41L4B	chr9	109166974	109326059