JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPB41L4B_chr9_109166974_109326059	0/0	t0075	3193	1	0	0	1	0	0	copy fasta	EPB41L4B	chr9	109166974	109326059
EPB41L5_chr2_120008077_120184119	0/1	t0001	4355	123	28	26	57	2	9	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	1/0	t0002	4355	84	19	18	33	2	11	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0003	4355	18	0	1	17	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0004	4357	10	7	3	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0005	4357	10	5	4	0	0	1	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0006	4356	9	8	1	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0007	4355	3	0	0	3	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0008	4357	2	2	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0009	4357	2	2	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0010	4355	2	1	0	0	0	1	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0011	4398	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0012	4354	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0013	4355	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0014	4355	1	0	1	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0015	4312	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0016	4357	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0017	4356	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0018	4355	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0019	4355	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0020	4312	1	0	0	0	0	1	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0021	4355	1	0	1	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0022	4355	1	0	0	1	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0023	4355	1	0	1	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0024	4355	1	1	0	0	0	0	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41L5_chr2_120008077_120184119	0/0	t0025	4355	1	0	0	0	0	1	copy fasta	EPB41L5	chr2	120008077	120184119
EPB41_chr1_28909569_29125041	1/1	t0001	3437	101	22	17	51	0	9	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0002	3436	98	12	21	48	3	14	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0003	3436	16	11	3	0	2	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0004	3436	15	4	4	5	0	2	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0005	3436	11	6	2	3	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0006	3436	9	0	5	0	2	2	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0007	3436	9	6	3	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0008	3436	5	5	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0009	3436	4	3	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0010	3436	3	0	0	3	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0011	3436	3	0	0	0	0	3	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0012	3436	3	0	2	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0013	3436	3	2	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0014	3437	3	0	0	3	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0015	3437	3	2	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0016	3436	2	0	2	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0017	3436	2	0	0	2	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0018	3437	2	0	0	2	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0019	3436	2	0	0	0	0	2	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0020	3436	2	2	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0021	3436	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0022	3436	1	0	0	0	1	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0023	3436	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0024	3436	1	0	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041