JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPB41_chr1_28909569_29125041	0/0	t0025	3436	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0026	3436	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0027	3437	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0028	3436	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0029	3436	1	0	0	0	0	1	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0030	3436	1	0	0	1	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0031	3437	1	0	1	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0032	3436	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0033	3437	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0034	3436	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0035	3437	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB41_chr1_28909569_29125041	0/0	t0036	3436	1	1	0	0	0	0	copy fasta	EPB41	chr1	28909569	29125041
EPB42_chr15_43192227_43226018	1/1	t0001	269	267	62	41	130	4	28	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	t0002	269	20	14	0	6	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPB42_chr15_43192227_43226018	0/0	t0003	269	1	0	1	0	0	0	copy fasta	EPB42	chr15	43192227	43226018
EPC1_chr10_32262751_32352158	0/1	t0001	1552	159	52	25	54	12	15	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0002	1550	36	0	7	22	1	6	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0003	1550	34	7	5	15	2	5	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0004	1551	25	6	13	0	1	5	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0005	1552	22	0	11	9	0	2	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0006	1553	21	17	2	0	0	2	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0007	1554	8	7	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0008	1551	3	3	0	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	1/0	t0009	1556	3	2	0	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0010	1553	3	0	1	0	2	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0011	1551	1	0	0	0	0	1	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0012	1552	1	0	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0013	1552	1	0	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC1_chr10_32262751_32352158	0/0	t0014	1551	1	0	1	0	0	0	copy fasta	EPC1	chr10	32262751	32352158
EPC2_chr2_148639751_148792569	0/1	t0001	1461	204	81	19	81	3	19	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0002	1462	84	1	17	52	3	11	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0003	1462	6	0	2	4	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0004	1461	6	0	0	6	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0005	1458	3	0	2	1	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	1/0	t0006	1460	1	0	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0007	1461	1	1	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0008	1461	1	1	0	0	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0009	1462	1	0	0	1	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPC2_chr2_148639751_148792569	0/0	t0010	1461	1	0	0	1	0	0	copy fasta	EPC2	chr2	148639751	148792569
EPCAM_chr2_47364311_47392020	1/1	t0001	603	379	78	59	187	13	40	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0002	603	43	0	11	24	3	5	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0003	583	8	8	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0004	583	5	5	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0005	603	3	0	0	1	0	2	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0006	603	3	3	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0007	603	3	0	0	3	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0008	603	1	0	0	1	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0009	603	1	1	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0010	603	1	0	0	1	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0011	603	1	0	0	0	0	1	copy fasta	EPCAM	chr2	47364311	47392020