JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPCAM_chr2_47364311_47392020	0/0	t0012	583	1	1	0	0	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPCAM_chr2_47364311_47392020	0/0	t0013	603	1	0	0	1	0	0	copy fasta	EPCAM	chr2	47364311	47392020
EPDR1_chr7_37915640_37956936	0/1	t0001	1840	83	9	23	38	6	6	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0002	1841	78	9	9	41	1	18	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	1/0	t0003	1841	71	4	5	59	2	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0004	1841	46	15	11	16	1	3	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0005	1827	40	1	10	24	2	3	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0006	1840	35	8	6	10	2	9	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0007	1828	14	1	6	3	0	4	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0008	1841	13	13	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0009	1841	9	9	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0010	1828	9	0	1	8	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0011	1840	6	0	4	0	2	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0012	1841	5	5	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0013	1841	4	4	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0014	1841	4	3	1	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0015	1841	3	0	0	0	0	3	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0016	1841	3	0	3	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0017	1827	3	1	1	1	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0018	1841	2	0	2	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0019	1841	2	2	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0020	1840	2	2	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0021	1841	2	2	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0022	1841	2	1	0	1	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0023	1840	1	0	0	0	0	1	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0024	1841	1	0	0	1	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0025	1841	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0026	1841	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0027	1841	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0028	1841	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0029	1827	1	0	1	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0030	1828	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0031	1828	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0032	1828	1	1	0	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0033	1828	1	0	0	0	0	1	copy fasta	EPDR1	chr7	37915640	37956936
EPDR1_chr7_37915640_37956936	0/0	t0034	1827	1	0	1	0	0	0	copy fasta	EPDR1	chr7	37915640	37956936
EPG5_chr18_45842609_45972329	0/1	t0001	4949	93	15	16	46	6	9	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0002	4948	58	1	13	37	1	6	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	1/0	t0003	4949	40	4	8	10	2	15	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0004	4948	24	6	6	6	1	5	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0005	4955	14	10	1	1	2	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0006	4953	10	10	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0007	4952	8	8	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0008	4949	6	1	0	3	0	2	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0009	4950	5	0	2	3	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0010	4955	4	4	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0011	4951	3	0	2	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0012	4950	3	0	0	3	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0013	4954	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0014	4952	2	2	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329