JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPG5_chr18_45842609_45972329	0/0	t0015	4948	2	1	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0016	4949	2	0	1	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0017	4955	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0018	4952	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0019	4952	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0020	4950	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0021	4950	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0022	4951	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0023	4953	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0024	4948	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0025	4948	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0026	4948	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0027	4950	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0028	4948	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0029	4949	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0030	4948	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0031	4948	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0032	4949	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0033	4949	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0034	4951	1	0	0	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0035	4949	1	0	1	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0036	4949	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0037	4949	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0038	4949	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0039	4949	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0040	4950	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0041	4949	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0042	4950	1	0	0	1	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0043	4948	1	0	0	0	0	1	copy fasta	EPG5	chr18	45842609	45972329
EPG5_chr18_45842609_45972329	0/0	t0044	4950	1	1	0	0	0	0	copy fasta	EPG5	chr18	45842609	45972329
EPGN_chr4_74303470_74321789	1/1	t0001	2217	221	41	38	116	8	16	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0002	2217	43	5	16	20	0	2	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0003	2218	38	12	6	13	0	7	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0004	2217	16	0	4	4	3	5	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0005	2218	12	7	3	0	0	2	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0006	2216	8	8	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0007	2217	7	6	1	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0008	2219	3	2	0	1	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0009	2219	3	3	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0010	2215	2	2	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0011	2217	2	0	0	2	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0012	2216	2	0	0	1	1	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0013	2216	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0014	2216	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0015	2218	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0016	2217	1	0	0	0	0	1	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0017	2218	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0018	2218	1	0	0	1	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0019	2217	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPGN_chr4_74303470_74321789	0/0	t0020	2217	1	0	0	0	0	1	copy fasta	EPGN	chr4	74303470	74321789