JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPGN_chr4_74303470_74321789	0/0	t0021	2217	1	1	0	0	0	0	copy fasta	EPGN	chr4	74303470	74321789
EPHA10_chr1_37710976_37770120	1/0	t0001	2451	130	21	33	50	7	18	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0002	2451	98	15	19	50	2	12	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/1	t0003	2450	40	13	12	0	7	7	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0004	2451	23	1	3	19	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0005	2451	20	8	0	12	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0006	2451	20	3	2	15	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0007	2450	12	9	3	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0008	2451	8	4	0	2	0	2	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0009	2450	7	6	1	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0010	2450	6	0	0	6	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0011	2451	3	3	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0012	2451	2	2	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0013	2451	2	0	0	0	0	2	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0014	2450	2	2	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0015	2451	2	2	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0016	2450	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0017	2451	1	0	0	0	0	1	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0018	2451	1	0	1	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0019	2450	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0020	2451	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0021	2451	1	0	0	1	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA10_chr1_37710976_37770120	0/0	t0022	2450	1	1	0	0	0	0	copy fasta	EPHA10	chr1	37710976	37770120
EPHA1_chr7_143386129_143413856	1/0	t0001	380	337	78	45	175	11	27	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/1	t0002	380	58	4	20	9	7	17	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	t0003	380	29	4	9	12	0	4	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	t0004	380	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA1_chr7_143386129_143413856	0/0	t0005	380	1	0	0	1	0	0	copy fasta	EPHA1	chr7	143386129	143413856
EPHA2_chr1_16119337_16161069	0/1	t0001	1016	266	71	65	73	16	40	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	1/0	t0002	1016	29	9	4	13	0	2	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	t0003	1016	11	11	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	t0004	1016	3	0	0	3	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	t0005	1016	1	0	1	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	t0006	1016	1	0	0	1	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA2_chr1_16119337_16161069	0/0	t0007	1016	1	1	0	0	0	0	copy fasta	EPHA2	chr1	16119337	16161069
EPHA3_chr3_89102621_89487134	1/1	t0001	2761	82	12	20	35	3	10	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0002	2761	33	18	4	8	2	1	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0003	2762	28	2	11	9	2	4	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0004	2761	17	4	8	3	1	1	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0005	2761	17	14	3	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0006	2762	4	3	0	0	0	1	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0007	2761	3	0	1	2	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0008	2761	2	2	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0009	2761	1	0	0	1	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0010	2761	1	0	0	1	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0011	2762	1	0	1	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0012	2762	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0013	2761	1	0	0	1	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0014	2762	1	0	0	1	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0015	2761	1	0	0	1	0	0	copy fasta	EPHA3	chr3	89102621	89487134