JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHA3_chr3_89102621_89487134	0/0	t0016	2761	1	0	0	0	0	1	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0017	2752	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0018	2761	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0019	2761	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0020	2752	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0021	2761	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA3_chr3_89102621_89487134	0/0	t0022	2761	1	1	0	0	0	0	copy fasta	EPHA3	chr3	89102621	89487134
EPHA4_chr2_221413027_221577304	1/1	t0001	3402	121	10	29	61	4	15	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0002	3402	53	7	13	25	0	8	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0003	3406	19	10	5	0	0	4	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0004	3402	14	3	4	5	1	1	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0005	3402	13	1	1	9	0	2	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0006	3406	6	2	0	4	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0007	3402	4	0	0	4	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0008	3402	4	4	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0009	3402	3	3	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0010	3401	3	3	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0011	3402	3	3	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0012	3406	3	3	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0013	3402	2	2	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0014	3402	2	0	0	0	0	2	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0015	3402	2	2	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0016	3402	2	0	0	2	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0017	3402	2	2	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0018	3406	2	2	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0019	3406	2	1	1	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0020	3402	2	0	0	2	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0021	3406	2	0	0	0	0	2	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0022	3402	2	2	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0023	3402	2	0	0	2	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0024	3406	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0025	3401	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0026	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0027	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0028	3406	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0029	3406	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0030	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0031	3402	1	0	0	0	0	1	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0032	3402	1	0	0	0	0	1	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0033	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0034	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0035	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0036	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0037	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0038	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0039	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0040	3402	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0041	3402	1	0	0	1	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0042	3402	1	0	0	1	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0043	3406	1	0	1	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304