JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHA4_chr2_221413027_221577304	0/0	t0044	3406	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0045	3406	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0046	3406	1	0	0	0	1	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0047	3402	1	0	0	1	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0048	3402	1	0	0	1	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA4_chr2_221413027_221577304	0/0	t0049	3406	1	1	0	0	0	0	copy fasta	EPHA4	chr2	221413027	221577304
EPHA5_chr4_65314567_65675489	0/0	t0001	5295	34	3	7	12	2	10	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0002	5295	23	1	6	13	2	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0003	5295	17	3	4	5	0	5	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0004	5295	15	1	4	5	1	4	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0005	5295	12	1	3	8	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0006	5295	10	7	1	1	0	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0007	5295	9	0	5	3	1	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/1	t0008	5296	7	3	1	0	2	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0009	5295	6	2	1	0	2	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0010	5296	6	6	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0011	5295	6	0	0	6	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	1/0	t0012	5295	5	4	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0013	5295	5	0	0	5	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0014	5295	5	0	2	3	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0015	5295	5	1	1	1	1	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0016	5289	3	3	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0017	5295	3	3	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0018	5292	3	3	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0019	5295	3	3	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0020	5298	3	0	1	0	1	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0021	5299	3	3	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0022	5296	3	1	2	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0023	5295	3	2	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0024	5295	2	0	0	2	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0025	5295	2	2	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0026	5296	2	2	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0027	5290	2	2	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0028	5293	2	2	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0029	5295	2	2	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0030	5295	2	0	0	2	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0031	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0032	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0033	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0034	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0035	5289	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0036	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0037	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0038	5298	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0039	5295	1	0	0	0	0	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0040	5295	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0041	5295	1	0	0	0	0	1	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0042	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0043	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0044	5293	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489