JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
EPHA5_chr4_65314567_65675489	0/0	t0045	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0046	5296	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0047	5294	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0048	5295	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0049	5295	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0050	5289	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0051	5289	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0052	5298	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0053	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0054	5298	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0055	5293	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0056	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0057	5298	1	0	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0058	5295	1	0	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0059	5295	1	1	0	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0060	5295	1	0	1	0	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA5_chr4_65314567_65675489	0/0	t0061	5295	1	0	0	1	0	0	copy fasta	EPHA5	chr4	65314567	65675489
EPHA6_chr3_96809594_97766532	0/0	t0001	12862	21	14	5	2	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0002	12855	12	4	7	1	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0003	12860	8	2	4	2	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0004	12862	7	6	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0005	12859	3	2	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0006	12862	3	3	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0007	12858	2	2	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0008	12862	2	0	1	1	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0009	12859	2	2	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0010	12837	2	2	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0011	12862	2	2	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0012	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0013	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0014	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0015	12848	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0016	12862	1	0	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0017	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0018	12855	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0019	12858	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0020	12861	1	0	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0021	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0022	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0023	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0024	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0025	12855	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0026	12855	1	0	1	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0027	12858	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0028	12858	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA6_chr3_96809594_97766532	0/0	t0029	12862	1	1	0	0	0	0	copy fasta	EPHA6	chr3	96809594	97766532
EPHA7_chr6_93235020_93424559	0/1	t0001	3625	101	13	19	51	4	13	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0002	3625	75	44	13	6	5	7	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	1/0	t0003	3625	34	0	12	16	2	3	copy fasta	EPHA7	chr6	93235020	93424559
EPHA7_chr6_93235020_93424559	0/0	t0004	3626	18	0	6	8	1	3	copy fasta	EPHA7	chr6	93235020	93424559